FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index16_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18318752 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 4697750 | 2.9500678 | 5.0486407 | 2 |
| GAAGA | 3911460 | 2.5461416 | 5.2064376 | 2 |
| CTTCT | 3964220 | 2.5295208 | 5.460743 | 1 |
| CCAGG | 3771205 | 2.5226495 | 5.1185026 | 1 |
| AAGAA | 3941740 | 2.5201757 | 5.1681824 | 2 |
| CCTGG | 3775055 | 2.5157557 | 5.824864 | 1 |
| TCTTC | 3820750 | 2.4379745 | 5.0060253 | 7 |
| CTGGA | 3661390 | 2.4069924 | 8.406651 | 1 |
| TCCAG | 3549585 | 2.3233895 | 5.1632547 | 2 |
| CTCCT | 3522340 | 2.2869673 | 6.967184 | 1 |
| CTGGG | 3341870 | 2.236758 | 8.069259 | 1 |
| CAGGA | 3335155 | 2.2007778 | 5.4742637 | 1 |
| CTTCA | 3428125 | 2.1956785 | 5.5424023 | 1 |
| CTCCA | 3314065 | 2.1598384 | 7.293041 | 1 |
| CCCAG | 3215575 | 2.1416633 | 6.828669 | 1 |
| CAGAA | 3231890 | 2.0946717 | 5.222926 | 1 |
| CTCTG | 3089935 | 2.0149405 | 6.219949 | 1 |
| CTGGC | 2804530 | 1.8689829 | 5.0909667 | 1 |
| CTGAA | 2861570 | 1.8477033 | 5.617836 | 1 |
| TGGAA | 2838880 | 1.8410227 | 5.0606084 | 2 |
| CTCAG | 2655310 | 1.7380397 | 6.1342883 | 1 |
| CTTTG | 2659910 | 1.7046362 | 5.100484 | 1 |
| CTTGG | 2495725 | 1.6345335 | 5.2715626 | 1 |